LOYOLA COLLEGE (AUTONOMOUS), CHENNAI – 600 034
B.Sc. DEGREE EXAMINATION – PHYSICS & PL.BIO.& BIOTECH.
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FOURTH SEMESTER – APRIL 2008
AZ 4200 / 4202 – BIOINFORMATICS
Date : 24/04/2008 Dept. No. Max. : 100 Marks
Time : 9:00 – 12:00
PART–A
Answer ALL the questions (10 x 2 =20)
- What is computational biology?
- State ‘FASTA FORMAT’
- What is biological data mining?
- Distinguish alpha helix from beta pleat.
- Define Tanimoto coefficient.
- How do you down load Rasmol?
- What are logical operators? Mention any two of them.
- Name various types of Amino acids found in the biosystem.
- Comment on Phylip and SOPMA
- Expand PUBMED and EXPASY.
PART-B
Answer any FOUR of the following (4X10=40)
- Describe Sanger method of sequencing.
- State the applications of human genome project.
- When will you perform BLAST and CLUSTAL ‘W’? What would be the output?
- Highlight the principle and application of microarray.
- Demonstrate primary and secondary structure analysis of a protein using relevant tools
- Write down a program in C to find the biggest of three numbers using logical operators.
PART-C
Answer any TWO of the following (2X20=40)
- Propose a protocol for each of southern blotting and DNA finger printing techniques.
- Give an account on biological data bases and explain the tools associated for analysis
- Classify proteins based on structure. How do you view them using bioinformatics tools.
- Highlight the following in view of pharmainformatics: a) Target indentification and validation b)
Compound optimization c) QSAR d) Docking algorithm
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