LOYOLA COLLEGE (AUTONOMOUS), CHENNAI – 600 034 B.Sc. DEGREE EXAMINATION – PLANT BIOLOGY & BIOTECHNOLOGY
|
FIFTH SEMESTER – NOV 2006
PB 5404 – BIO-INFORMATICS
Date & Time : 06-11-2006/9.00-12.00 Dept. No. Max. : 100 Marks
PART A
Answer all the questions (20 marks)
I Choose the correct answer (5 x1 = 5)
- _________ is a secondary database.
- a) PIR b) swissprot c) prosite d) ncbi
- _________ is a nucleic acid seqeuence database.
- a) DDBK b) Genbank c) sopma d)PDB
- _________ is the visual comparison of 2 sequences.
- a) dotplot b) PDB c) Lalign d) blast
- _________is a database search tool.
- a) blast b) PIR c) PDB d) expasy.
- ________is the software to find gene locations in genomes.
- a) mapviewer b) blast c) fasta d) sopma
II State True or False (5 x 1 =5)
- GC % is related to Tm.
- Proteases are enzymes which cut DNA sequences.
- Rasmol is a protein structure database.
- Protein structures can be downloaded from swissprot.
- Swissmodel results can be obtained through email.
III Complete the following (5 x 1 = 5)
- _________is a Secondary structure prediction tool.
- _________ is used to search NCBI protein sequence databases.
- _________ is a protein structure visualization tool.
- _________is a gene prediction software.
- Tm represents _________ of DNA. .
IV Define the following . (5 x 1 = 5)
- Define : Transition
- Expand PAM.
- What is a Dendogram.
- Expand : NCBI.
- Expand : EMBL..
PART B
Answer any Five of the following , each in about 350 words. (5 x 8 =40)
- Explain dotplot and its applications.
- Explain promoter 2.0 and its applications.
- Explain any 5 commands in rasmol.
- Describe in general the various types of biological databases.
- Explain peptide cutter and its applications.
- Explain the software to identify the restriction site in DNA.
- Explain SOPMA in detail.
- Explain prosite patterns.
PART C
Answer the following, each in about 1500 words. (2 x 20 = 40)
Draw diagrams / flowcharts wherever necessary.
29.a) Explain smithwaterman algorithm in detail.
Or
- b) Discuss homology modelling in detail.
30.a) Discuss BLAST, its types, process and output format.
Or
- b) Explain genbank and its file format.